Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141464
2923639430.9210638.82.7
Bilateral animals (Bilateria)25
8372
21568334.92176122.31.5
Chordates (Chordata)87
182175
5874442094.05192100.03.1
Ciona sea squirts (Ciona)3
6
222.0222.01.0
Ciona intestinalis12
34
252.8111.02.8
Ciona savignyi4
25
2186.2111.06.2
Vertebrates (Vertebrata)197
68058
25022345.5219184.84.3
Jawed vertebrates (Gnathostomata)169
81901
2922446484.611193102.32.6
Bony vertebrates (Euteleostomi)401
113803
26341283.8218076.86.3
Bony fishes (Actinopterygii)5
581
2386116.226120.410.8
Ray-finned fishes (Neopterygii)9
2412
35398268.036426.427.8
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Osteoglossocephalai8
2215
11387276.935125.425.0
Teleost fishes (Clupeocephala)510
22881
239844.92546.710.7
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)11
1279
2386116.3111.0116.3
Brown trout (Salmo trutta)4
14
273.5111.03.5
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Goldfish (Carassius auratus)5
1242
75362248.4111.0248.4
Rainbow trout (Oncorhynchus mykiss)32
7808
2390244.0111.0244.0
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Zebrafish (Danio rerio)39
1187
238030.4111.030.4
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Lumpfish (Cyclopterus lumpus)3
385
2379128.3111.0128.3
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Turbot (Scophthalmus maximus)37
10848
53390293.2111.0293.2
Denticle herring (Denticeps clupeoides reference strain)29
7776
26398268.1111.0268.1
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Atlantic salmon (Salmo salar)632
3853
23856.1111.06.1
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)59
17289
21452293.0212167.56.6
Tetrapods (Tetrapoda)52
12851
2398247.1212274.36.8
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)277
67005
23200241.9211663.93.6
Reptiles and birds (Sauria)312
1438
23684.62123.31.4
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Mammals (Mammalia)23
5137
3435223.338962.43.5
Marsupials and Placental mammals (Theria)89
11675
2398131.229245.32.9
Marsupials (Marsupialia)55
1153
239521.0243.15.5
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Placentals (Eutheria)11703
148097
2339712.72884.61.5
Macaque (Macaca mulatta)1
2
222.0111.02.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Olive baboon (Papio anubis)2
5
232.5111.02.5
Pika (Ochotona princeps)65
150
272.3111.02.3
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Human (Homo sapiens)62
148
282.4111.02.4
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4