Gene: PEPD ENSG00000124299

Description

peptidase D [Source:HGNC Symbol;Acc:HGNC:8840]

Location

Chromosome 19: 33,386,950-33,521,823 reverse strand.

GRCh38:CM000681.2

About this gene

This gene has 54 transcripts (splice variants), 212 orthologues, 7 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000244137.12	PEPD-201	1907	493aa	ENSP00000244137.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42544	P12955-1	NM_000285.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00001110219.1	PEPD-252	2667	337aa	ENSP00000780024.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698362.1	PEPD-218	2114	361aa	ENSP00000513685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TN48	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698426.2	PEPD-222	2084	386aa	ENSP00000513713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TLN7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698361.2	PEPD-217	2055	495aa	ENSP00000513684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TLP4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000651901.3	PEPD-214	2029	523aa	ENSP00000498922.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494C165	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698427.2	PEPD-223	2007	507aa	ENSP00000513714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TLR1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000588328.8	PEPD-204	2005	515aa	ENSP00000468516.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ES25	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000698360.2	PEPD-216	1990	510aa	ENSP00000513683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TLL9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698428.2	PEPD-224	1979	386aa	ENSP00000513715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TLN7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000879074.2	PEPD-238	1978	506aa	ENSP00000549133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000947369.2	PEPD-244	1972	504aa	ENSP00000617428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00001028169.1	PEPD-251	1936	492aa	ENSP00000697986.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000879078.2	PEPD-242	1924	488aa	ENSP00000549137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENST00000879073.2	PEPD-237	1909	483aa	ENSP00000549132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698359.2	PEPD-215	1894	478aa	ENSP00000513682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TNF2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000947370.2	PEPD-245	1891	477aa	ENSP00000617429.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000879077.2	PEPD-241	1870	470aa	ENSP00000549136.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000926219.2	PEPD-243	1867	469aa	ENSP00000596278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000397032.9	PEPD-202	1816	452aa	ENSP00000380226.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54245	P12955-2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000879075.2	PEPD-239	1792	444aa	ENSP00000549134.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000436370.8	PEPD-203	1747	429aa	ENSP00000391890.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54244	P12955-3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000879076.2	PEPD-240	1720	420aa	ENSP00000549135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698432.1	PEPD-228	1670	430aa	ENSP00000513718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TLP2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000879072.2	PEPD-236	1453	331aa	ENSP00000549131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00001110220.1	PEPD-253	1144	110aa	ENSP00000780025.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000651646.2	PEPD-213	1022	224aa	ENSP00000498950.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494C194	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698435.1	PEPD-231	615	195aa	ENSP00000513719.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TLR6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000991529.1	PEPD-250	2732	276aa	ENSP00000661346.1	Nonsense mediated decay		-	-	-
ENST00000991523.1	PEPD-246	2262	390aa	ENSP00000661340.1	Nonsense mediated decay		-	-	-
ENST00000698430.1	PEPD-226	2111	30aa	ENSP00000513716.1	Nonsense mediated decay		A0A8V8TM81	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000991524.1	PEPD-247	2074	276aa	ENSP00000661341.1	Nonsense mediated decay		-	-	-
ENST00000991526.1	PEPD-249	1952	186aa	ENSP00000661343.1	Nonsense mediated decay		-	-	-
ENST00000991525.1	PEPD-248	1722	361aa	ENSP00000661342.1	Nonsense mediated decay		-	-	-
ENST00001121744.1	PEPD-254	1721	67aa	ENSP00000791549.1	Nonsense mediated decay		-	-	-
ENST00000698431.1	PEPD-227	1598	93aa	ENSP00000513717.1	Nonsense mediated decay		A0A8V8TNH5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000698439.1	PEPD-235	879	133aa	ENSP00000513721.1	Nonsense mediated decay		A0A8V8TM86	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000698436.1	PEPD-232	770	115aa	ENSP00000513720.1	Nonsense mediated decay		A0A8V8TN70	-	-
ENST00000590755.6	PEPD-208	547	55aa	ENSP00000476667.1	Nonsense mediated decay		V9GYE4	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590408.1	PEPD-206	433	42aa	ENSP00000476869.1	Nonsense mediated decay		V9GYL0	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000698429.1	PEPD-225	1744	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000698437.1	PEPD-233	1576	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000698364.1	PEPD-220	1533	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000698363.1	PEPD-219	1318	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000590731.6	PEPD-207	950	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000591968.1	PEPD-209	943	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000698433.1	PEPD-229	939	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000698438.1	PEPD-234	849	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000698434.1	PEPD-230	545	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000588719.5	PEPD-205	484	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000698365.1	PEPD-221	2382	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593085.1	PEPD-210	1763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000593163.6	PEPD-211	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000609145.5	PEPD-212	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Gene: PEPD ENSG00000124299

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Gene: PEPD ENSG00000124299

Summary

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