Gene: HSPA9 ENSG00000113013

Description

heat shock protein family A (Hsp70) member 9 [Source:HGNC Symbol;Acc:HGNC:5244]

Gene Synonyms

GRP75, HSPA9B, MOT-2, MTHSP75, PBP74

Location

Chromosome 5: 138,553,756-138,575,675 reverse strand.

GRCh38:CM000667.2

About this gene

This gene has 59 transcripts (splice variants), 216 orthologues, 13 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000297185.9	HSPA9-201	4404	679aa	ENSP00000297185.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4208	A0A384P5G6 P38646	NM_004134.7	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000946847.2	HSPA9-241	4762	740aa	ENSP00000616906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000936338.2	HSPA9-230	4597	685aa	ENSP00000606397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000946842.2	HSPA9-236	4573	677aa	ENSP00000616901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000852879.2	HSPA9-225	4570	676aa	ENSP00000522938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000946845.2	HSPA9-239	4570	676aa	ENSP00000616904.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000936335.2	HSPA9-228	4567	675aa	ENSP00000606394.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000946846.2	HSPA9-240	4558	672aa	ENSP00000616905.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000852881.2	HSPA9-227	4522	660aa	ENSP00000522940.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000677425.2	HSPA9-214	4486	648aa	ENSP00000503066.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A7I2V2S7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000677066.1	HSPA9-213	4479	610aa	ENSP00000502902.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A7I2V2G2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000946843.2	HSPA9-237	4474	644aa	ENSP00000616902.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00001122418.1	HSPA9-259	4432	630aa	ENSP00000792223.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000678300.1	HSPA9-220	4415	610aa	ENSP00000503259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A7I2V2G2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000678384.1	HSPA9-221	4413	610aa	ENSP00000503992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A7I2V2G2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000678051.1	HSPA9-219	4370	577aa	ENSP00000503219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A7I2YQB2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000946844.2	HSPA9-238	4369	609aa	ENSP00000616903.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000677064.2	HSPA9-212	4351	603aa	ENSP00000503373.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A7I2V3F7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000946848.2	HSPA9-242	4258	572aa	ENSP00000616907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000936340.2	HSPA9-232	4141	533aa	ENSP00000606399.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000936337.2	HSPA9-229	4045	501aa	ENSP00000606396.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000936341.2	HSPA9-233	3835	431aa	ENSP00000606400.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000852880.2	HSPA9-226	3781	413aa	ENSP00000522939.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000936343.2	HSPA9-235	3688	382aa	ENSP00000606402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000852878.2	HSPA9-224	3145	201aa	ENSP00000522937.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000936342.2	HSPA9-234	3097	185aa	ENSP00000606401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000936339.2	HSPA9-231	3034	164aa	ENSP00000606398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00001112390.1	HSPA9-257	2336	467aa	ENSP00000782195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000507115.7	HSPA9-206	2265	665aa	ENSP00000423759.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCD7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00001109565.1	HSPA9-255	1316	333aa	ENSP00000779370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00001112391.1	HSPA9-258	1307	296aa	ENSP00000782196.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00001109566.1	HSPA9-256	1218	302aa	ENSP00000779371.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000677693.1	HSPA9-217	4814	42aa	ENSP00000503383.1	Nonsense mediated decay		A0A7I2V3D9	-	-
ENST00000677988.1	HSPA9-218	4449	42aa	ENSP00000502960.1	Nonsense mediated decay		A0A7I2V3D9	-	-
ENST00000677527.1	HSPA9-215	4345	38aa	ENSP00000503650.1	Nonsense mediated decay		A0A7I2V4A9	-	-
ENST00000649578.2	HSPA9-210	4345	180aa	ENSP00000497906.1	Nonsense mediated decay		A0A3B3ITI4	-	-
ENST00000678794.1	HSPA9-223	4329	100aa	ENSP00000504274.1	Nonsense mediated decay		A0A7I2YQQ5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000677553.1	HSPA9-216	4316	56aa	ENSP00000502970.1	Nonsense mediated decay		A0A7I2V2K6	-	-
ENST00001086297.1	HSPA9-249	3533	592aa	ENSP00000756103.1	Nonsense mediated decay		-	-	-
ENST00000986019.1	HSPA9-243	3400	42aa	ENSP00000655836.1	Nonsense mediated decay		-	-	-
ENST00001086296.1	HSPA9-248	3332	42aa	ENSP00000756102.1	Nonsense mediated decay		-	-	-
ENST00001052386.1	HSPA9-244	3315	296aa	ENSP00000722203.1	Nonsense mediated decay		-	-	-
ENST00001086295.1	HSPA9-247	3302	608aa	ENSP00000756101.1	Nonsense mediated decay		-	-	-
ENST00001086300.1	HSPA9-251	2947	350aa	ENSP00000756106.1	Nonsense mediated decay		-	-	-
ENST00001052395.1	HSPA9-246	2876	506aa	ENSP00000722212.1	Nonsense mediated decay		-	-	-
ENST00001086301.1	HSPA9-252	2767	151aa	ENSP00000756107.1	Nonsense mediated decay		-	-	-
ENST00001052392.1	HSPA9-245	2719	316aa	ENSP00000722209.1	Nonsense mediated decay		-	-	-
ENST00001086299.1	HSPA9-250	2694	431aa	ENSP00000756105.1	Nonsense mediated decay		-	-	-
ENST00001109563.1	HSPA9-253	1995	42aa	ENSP00000779368.1	Nonsense mediated decay		-	-	-
ENST00001109564.1	HSPA9-254	1878	180aa	ENSP00000779369.1	Nonsense mediated decay		-	-	-
ENST00000504902.6	HSPA9-203	1749	458aa	ENSP00000421311.2	Nonsense mediated decay		H0Y8K0	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000512328.1	HSPA9-208	482	102aa	ENSP00000421892.1	Nonsense mediated decay		H0Y8S0	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000678551.1	HSPA9-222	2868	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000501917.7	HSPA9-202	285	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000649692.2	HSPA9-211	7459	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524109.2	HSPA9-209	3142	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000508003.2	HSPA9-207	2272	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000507097.5	HSPA9-205	1796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000506477.5	HSPA9-204	664	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Gene: HSPA9 ENSG00000113013

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Gene: HSPA9 ENSG00000113013

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