Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Mfsd9 ENSMUSG00000041945

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Description

major facilitator superfamily domain containing 9 [Source:MGI Symbol;Acc:MGI:2443548]

Gene Synonyms

4931419K03Rik

Location

Chromosome 1: 40,810,401-40,829,859 reverse strand.

GRCm39:CM000994.3

About this gene

This gene has 11 transcripts (splice variants), 213 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000039672.6	Mfsd9-201	3160	466aa	ENSMUSP00000035727.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14915	Q8C0T7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000393532.1	Mfsd9-206	4066	50aa	ENSMUSP00000171895.1	Nonsense mediated decay		-	-
ENSMUST00000393530.1	Mfsd9-204	3962	157aa	ENSMUSP00000171893.1	Nonsense mediated decay		-	-
ENSMUST00000393534.1	Mfsd9-208	3944	166aa	ENSMUSP00000171897.1	Nonsense mediated decay		-	-
ENSMUST00000393531.1	Mfsd9-205	3889	138aa	ENSMUSP00000171894.1	Nonsense mediated decay		-	-
ENSMUST00000393533.1	Mfsd9-207	3827	124aa	ENSMUSP00000171896.1	Nonsense mediated decay		-	-
ENSMUST00000393537.1	Mfsd9-211	3438	78aa	ENSMUSP00000171900.1	Nonsense mediated decay		-	-
ENSMUST00000393535.1	Mfsd9-209	3365	227aa	ENSMUSP00000171898.1	Nonsense mediated decay		-	-
ENSMUST00000131390.8	Mfsd9-202	3311	50aa	ENSMUSP00000137884.2	Nonsense mediated decay		M0QWK7	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000393536.1	Mfsd9-210	3202	99aa	ENSMUSP00000171899.1	Nonsense mediated decay		-	-
ENSMUST00000144385.2	Mfsd9-203	2425	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

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Summary

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