Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
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Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
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Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Medag ENSMUSG00000029659

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Description

mesenteric estrogen dependent adipogenesis [Source:MGI Symbol;Acc:MGI:1917967]

Gene Synonyms

6330406I15Rik, MEDA-4

Location

Chromosome 5: 149,334,629-149,356,015 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 9 transcripts (splice variants) and 172 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000093110.12	Medag-201	2953	303aa	ENSMUSP00000090798.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19884	Q14BA6-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000482740.1	Medag-208	2800	252aa	ENSMUSP00000261103.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000201083.3	Medag-202	2690	189aa	ENSMUSP00000144535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q14BA6-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000482736.1	Medag-204	4252	130aa	ENSMUSP00000261099.1	Nonsense mediated decay		-	-
ENSMUST00000482738.1	Medag-206	3056	93aa	ENSMUSP00000261101.1	Nonsense mediated decay		-	-
ENSMUST00000482737.1	Medag-205	2936	98aa	ENSMUSP00000261100.1	Nonsense mediated decay		-	-
ENSMUST00000482739.1	Medag-207	2880	135aa	ENSMUSP00000261102.1	Nonsense mediated decay		-	-
ENSMUST00000482741.1	Medag-209	2156	107aa	ENSMUSP00000261104.1	Nonsense mediated decay		-	-
ENSMUST00000201588.2	Medag-203	1353	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

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Summary

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