Gene: Usp12 ENSMUSG00000029640

Description

ubiquitin specific peptidase 12 [Source:MGI Symbol;Acc:MGI:1270128]

Gene Synonyms

Ubh1

Location

Chromosome 5: 146,671,615-146,731,819 reverse strand.

GRCm39:CM000998.3

About this gene

This gene has 15 transcripts (splice variants), 304 orthologues, 2 paralogues and is associated with 25 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000085614.7	Usp12-201	4330	370aa	ENSMUSP00000082754.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS39395	Q9D9M2-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000418990.1	Usp12-210	4294	358aa	ENSMUSP00000197353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000418987.1	Usp12-207	4251	323aa	ENSMUSP00000197350.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000557701.1	Usp12-211	6695	196aa	ENSMUSP00000336064.1	Nonsense mediated decay		-	-
ENSMUST00000418988.1	Usp12-208	6361	57aa	ENSMUSP00000197351.1	Nonsense mediated decay		-	-
ENSMUST00000418989.1	Usp12-209	4410	228aa	ENSMUSP00000197352.1	Nonsense mediated decay		-	-
ENSMUST00000557702.1	Usp12-212	4410	215aa	ENSMUSP00000336065.1	Nonsense mediated decay		-	-
ENSMUST00000557703.1	Usp12-213	4280	120aa	ENSMUSP00000336066.1	Nonsense mediated decay		-	-
ENSMUST00000418984.1	Usp12-204	4257	185aa	ENSMUSP00000197347.1	Nonsense mediated decay		-	-
ENSMUST00000418986.1	Usp12-206	4186	219aa	ENSMUSP00000197349.1	Nonsense mediated decay		-	-
ENSMUST00000557705.1	Usp12-215	4162	116aa	ENSMUSP00000336068.1	Nonsense mediated decay		-	-
ENSMUST00000418985.1	Usp12-205	4000	57aa	ENSMUSP00000197348.1	Nonsense mediated decay		-	-
ENSMUST00000557704.1	Usp12-214	3572	46aa	ENSMUSP00000336067.1	Nonsense mediated decay		-	-
ENSMUST00000138202.8	Usp12-203	3914	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000124009.2	Usp12-202	543	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Gene: Usp12 ENSMUSG00000029640

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Gene: Usp12 ENSMUSG00000029640

Summary

About Us

Get help

Our sister sites

Follow us